publications

2024

1. IEEE-BIBM

   Multi-modal Spatial Clustering for Spatial Transcriptomics Utilizing High-resolution Histology Images

   Bingjun Li, Mostafa Karami, Masum Shah Junayed, and 1 more author

   arXiv preprint arXiv:2411.02534, 2024

   Bib HTML

   @article{li2024multi,
     title = {Multi-modal Spatial Clustering for Spatial Transcriptomics Utilizing High-resolution Histology Images},
     author = {Li, Bingjun and Karami, Mostafa and Junayed, Masum Shah and Nabavi, Sheida},
     journal = {arXiv preprint arXiv:2411.02534},
     year = {2024}
   }

2. BMC-bioinfo

   A multimodal graph neural network framework for cancer molecular subtype classification

   Bingjun Li, and Sheida Nabavi

   BMC bioinformatics, 2024

   Bib HTML

   @article{li2024multimodal,
     title = {A multimodal graph neural network framework for cancer molecular subtype classification},
     author = {Li, Bingjun and Nabavi, Sheida},
     journal = {BMC bioinformatics},
     volume = {25},
     number = {1},
     pages = {27},
     year = {2024},
     publisher = {Springer}
   }

2023

1. IEEE-BIBM

   scGEMOC, A Graph Embedded Contrastive Learning Single-cell Multiomics Clustering Model

   Bingjun Li, and Sheida Nabavi

   In 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2023

   Bib HTML

   @inproceedings{li2023scgemoc,
     title = {scGEMOC, A Graph Embedded Contrastive Learning Single-cell Multiomics Clustering Model},
     author = {Li, Bingjun and Nabavi, Sheida},
     booktitle = {2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)},
     pages = {2075--2080},
     year = {2023},
     organization = {IEEE}
   }

2. ACM-BCB

   Contrastive Learning in Single-cell Multiomics Clustering

   Bingjun Li, and Sheida Nabavi

   In Proceedings of the 14th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 2023

   Bib

   @inproceedings{li2023contrastive,
     title = {Contrastive Learning in Single-cell Multiomics Clustering},
     author = {Li, Bingjun and Nabavi, Sheida},
     booktitle = {Proceedings of the 14th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics},
     pages = {1--1},
     year = {2023}
   }

2022

1. ACM-BCB

   Semi-supervised classification of disease prognosis using CR images with clinical data structured graph

   Jun Bai, Bingjun Li, and Sheida Nabavi

   2022

   Bib HTML

   @article{bai2022semi,
     title = {Semi-supervised classification of disease prognosis using CR images with clinical data structured graph},
     author = {Bai, Jun and Li, Bingjun and Nabavi, Sheida},
     booktitle = {Proceedings of the 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics},
     pages = {1--9},
     year = {2022}
   }

2021

1. IEEE-BIBM

   Single-cell RNA sequencing data clustering using graph convolutional networks

   Tianyu Wang, Bingjun Li, and Sheida Nabavi

   2021

   Bib HTML

   @article{wang2021single,
     title = {Single-cell RNA sequencing data clustering using graph convolutional networks},
     author = {Wang, Tianyu and Li, Bingjun and Nabavi, Sheida},
     booktitle = {2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)},
     pages = {2163--2170},
     year = {2021},
     organization = {IEEE}
   }

2. ACM-BCB

   Cancer molecular subtype classification by graph convolutional networks on multi-omics data

   Bingjun Li, Tianyu Wang, and Sheida Nabavi

   2021

   Bib HTML

   @article{li2021cancer,
     title = {Cancer molecular subtype classification by graph convolutional networks on multi-omics data},
     author = {Li, Bingjun and Wang, Tianyu and Nabavi, Sheida},
     booktitle = {Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics},
     pages = {1--9},
     year = {2021}
   }